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A modular systems biological modelling framework studies cyclic nucleotide signaling in platelets. Breitenbach T, Englert N, Osmanoglu Ö, Rukoyatkina N, Wangorsch G, Heinze K, Friebe A, Butt E, Feil R, Dittrich M, Gambaryan S, Dandekar T. J Theor Biol. 2022 Oct 7;550:111222. doi: 10.1016/j.jtbi.2022.111222. Epub 2022 Jul 16.
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Aspergillus fumigatus versus Genus Aspergillus: Conservation, Adaptive Evolution and Specific Virulence Genes. Gupta SK, Srivastava M, Osmanoglu Ö, Xu Z, Brakhage AA, Dandekar T. Microorganisms. 2021 Sep 23;9(10):2014. doi: 10.3390/microorganisms9102014.
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Modeling Immune Dynamics in Plants Using JIMENA-Package. Osmanoglu Ö, Shams S, Dandekar T, Naseem M. Methods Mol Biol. 2021;2328:183-189. doi: 10.1007/978-1-0716-1534-8_11.
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Integrated Framework of the Immune-Defense Transcriptional Signatures in the Arabidopsis Shoot Apical Meristem. Naseem M, Osmanoğlu Ö, Kaltdorf M, Alblooshi AAMA, Iqbal J, Howari FM, Srivastava M, Dandekar T. Int J Mol Sci. 2020 Aug 11;21(16):E5745. doi: 10.3390/ijms21165745.
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Bacterial Shoot Apical Meristem Inoculation Assay. Naseem M, Gun G, Osmanoglu O, AlRemeithi FA, Iqbal J, Dandekar T. Methods Mol Biol. 2020;2094:17-22. doi: 10.1007/978-1-0716-0183-9_2.
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Molecular Modeling of the Interaction Between Stem Cell Peptide and Immune Receptor in Plants. Naseem M, Srivastava M, Osmanoglu O, Iqbal J, Howari FM, AlRemeithi FA, Dandekar T. Methods Mol Biol. 2020;2094:67-77. doi: 10.1007/978-1-0716-0183-9_8.
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Mapping a Transcriptome-Guided Arabidopsis SAM Interactome. Naseem M, Osmanoglu O, Iqbal J, Howari FM, AlRemeithi FA, Kaltdorf M, Dandekar T. Methods Mol Biol. 2020;2094:113-118. doi: 10.1007/978-1-0716-0183-9_12.
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Genome-wide inference of the Camponotus floridanus protein-protein interaction network using homologous mapping and interacting domain profile pairs.Gupta SK, Srivastava M, Osmanoglu Ö, Dandekar T. Sci Rep. 2020 Feb 11;10(1):2334. doi: 10.1038/s41598-020-59344-1.
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Synthetic Rewiring of Plant CO2Sequestration Galvanizes Plant Biomass Production.Naseem M, Osmanoglu Ö, Dandekar T. Trends Biotechnol. 2020 Jan 17. pii: S0167-7799(19)30314-2. doi: 10.1016/j.tibtech.2019.12.019. [Epub ahead of print]
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| Last update Publications 23.07.2022 |
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